Package data before clustering — scregclust_format • scregclust

Package data before clustering

Usage

scregclust_format(expression_matrix, mode = c("TF", "kinase"))

Arguments

expression_matrix: The p x n gene expression matrix with gene symbols as rownames.
mode: Determines which genes are considered to be regulators.

Value

A list with

genesymbols: The gene symbols extracted from the expression matrix
sample_assignment: A vector filled with 1's of the same length as there are columns in the gene expression matrix.
is_regulator: Whether a gene is considered to be a regulator or not, determined dependent on mode.

See also

get_regulator_list()